PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.097890.1
Common NameCsa_1G045480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 530aa    MW: 57052.1 Da    PI: 7.459
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.097890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-30181240159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Cucsa.097890.1 181 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGSpTCPVRKQVQRCADDMSILITTYEGNHNHP 240
                     58**************************888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31167242IPR003657WRKY domain
SuperFamilySSF1182905.1E-27174242IPR003657WRKY domain
PROSITE profilePS5081128.656176242IPR003657WRKY domain
SMARTSM007744.2E-36181241IPR003657WRKY domain
PfamPF031061.4E-26182240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MGEVREENQR LKQSLTQIMK DYEALKMQFL GIVGRDCKKV QDEDNDVNKE QQQQQHDDDQ  60
IELVSLSLGR FPVSEKKKIV DEKSCMNIIG GDHNEEAACK EALSLGLNCK FEREESMMAV  120
AKEVDSPNSF DHESTKEEAG ETNWPSKGGK TMRSVEDDVT PQNPPKRARV CVRARCETAT  180
MNDGCQWRKY GQKIAKGNPC PRAYYRCTGS PTCPVRKQVQ RCADDMSILI TTYEGNHNHP  240
LPASANAMAS TTSAAASMLL SGSTTSATAA SSSSTASNSL HGLNFYPNNS KPNFYLPNSN  300
SSIISSTSPT HPTITLDLTS NPSSSPSSSS THFGKFTSNF PNSRYPFTGQ LDFGSSRNNV  360
LSWNNGLLSY NRNNHPTTTI TTANNIYQNY IQQQQRNPTT SLQHQQPPLP DTIAAATKAI  420
TADPSFQSAL AAALTSIIGT GGASASAGLT KSSSGRGEQS LFQLMTTAAT TNKGNGCGTS  480
FLNNITTTTT TTSNSPPTGN MVFVPTNSLP FSNSKSASAS PGDHIDLTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21168242174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152535.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A0A0LQQ60.0A0A0A0LQQ6_CUCSA; Uncharacterized protein
STRINGGLYMA06G20300.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.17e-55WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]